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Systems Neuroscience JC (NEUS 606-07)
Meetings are every Friday at 4-5 pm (with occasional breaks between quarters) in the conference room of MRB 9th floor unless otherwise noted.
Mailing list signup: mailman.ohsu.edu
Course info: NGP course list
Archive: Summer 2013
- Fall 2013 -
Winter 2014 -
Spring 2014 -
Summer 2014 -
Fall 2014 -
Winter 2015 -
Spring 2015 -
Summer 2015 -
Fall 2015 -
Winter 2016 -
Spring 2016 -
Fall 2016 -
Winter 2017 -
Spring 2017 -
Summer 2017-
Fall 2017 -
Winter 2018 -
Spring 2018 -
Summer 2018 -
Spring 2019 -
Fall 2019
Fall 2019
Date | Paper |
October 4 |
S. Bagur, M. Averseng, D. Elgueda, S. David, J. Fritz, P. Yin, S. Shamma,
Y. Boubenec, S. Ostojic (2018)
Go/no-go task engagement enhances population representation of target stimuli in primary auditory cortex.
Nature Commnications. 9: 2529. DOI: 10.1038/s41467-018-04839-9 -
PDF
Presenter: Charlie Heller
|
October 11 |
JZ See, CA Atencio, VS Sohal, CE Schreiner (2018)
Coordinated neuronal ensembles in primary auditory cortical columns.
eLIFE. 7:e35587. DOI: 10.7554/eLife.35587 -
PDF
Presenter: Stephen David
|
October 18 |
SFN, no meeting
|
November 1 |
C.R. Ponce, W. Xiao, P.F. Schade, T.S. Harmann, G. Kreiman, M.S. Livingstone. (2019)
Evolving Images for Visual Neurons Using a Deep Generative Network Reveals Coding Principles and Neuronal Preferences.
Cell. 177(4): 999-1009. DOI: 10.1016/j.cell.2019.04.005 -
PDF
Presenter: Greg Hamersky
|
November 22 |
O. Dal Monte, C-C.J. Chu, N.A. Fagan, S.W.C. Chang. (2019) Specialized medial prefrontal-amygdala coordination in other-regarding decision preference. bioRxiv. 640292. DOI: 10.1101/640292
Presenter: Jeremiah Morrow
|
November 29 |
No Meeting (Thanksgiving)
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Spring 2019
Date | Paper |
April 5 |
G.T. Neske and D.A. McCormick (2018) Distinct waking state for strong evoked respones in primary visual cortex and optimal visual detection performance. bioRxiv Oct 8, DOI: 10.1101/437681v1 -
PDF
Presenter: Zach Schwartz
|
April 12 |
D. Elgueda, D. Duque, S. Radtke-Schuller, P. Yin, S.V. David , S.A. Shamma and J.B. Fritz. (2019) State-dependent encoding of sound and behavioral meaning in a tertiary region of the ferret auditory cortex. Nature Neuroscience. 22: 447–459. DOI: 10.1038/s41593-018-0317-8 -
PDF
Presenter: Stephen David
|
April 19 |
TBD
Presenter: TBD
|
Summer 2018
Date | Paper |
June 22 |
L. Shaheen & M.C. Liberman (2018) Effects of cochlear synaptopathy on spontaneous and sound-evoked activity in the mouse inferior colliculus bioRxiv Aug 06, DOI: 10.1101/381087-
PDF
Presenter: Luke Shaheen
|
June 22 |
J. Zylberberg (2018) The Role of Untuned Neurons In Sensory Information Coding bioRxiv May 30, DOI: 10.1101/134379-
PDF
Background for noise correlations: B.B. Averbeck. P.E. Lathan and A. Pouget (2006) Neural correlations, population coding and computation, Nature May 2006. PDF
Presenter: Alexander Dimitrov
|
July 13 |
Elina A. K. Jacobs, Nicholas A. Steinmetz, Matteo Carandini, Kenneth D. Harris (2018). Cortical state fluctuations during sensory decision making. bioRxiv June 16, 2018, DIO: 10.1101/348193-
PDF
Presenter: Mateo Lopez Espejo
|
July 20 |
Jeffrey L. Gauthier and David W. Tank (2018). A dedicated population for reward coding in the hippocampus. Neuron DOI: 10.1016/j.neuron.2018.06.00a
PDF Preview
Presenter: Zack Schwartz
|
Spring 2018
Date | Paper |
April 20 |
M.M. Asokan, R.S. Williamson, K.E. Hancock, D.B. Polley (2017). Dynamic gain adjustments in descending corticofugal outputs from auditory cortex compensate for cochlear nerve synaptic damage bioRxiv Jul 13, doi: http://dx.doi.org/10.1101/162909- PDF
Presenter: Jesyin Lai
|
April 27 |
A. Sheikhattar, S. Miran, J. Liu, J.B. Fritz, S.A. Shamma, P.O. Kanold, B. Babadi (2018). Extracting Neuronal Functional Network Dynamics Via Adaptive Granger Causality Analysis. PNAS April 9, 2018, doi: https://doi.org/10.1073/pnas.1718154115- PDF
Presenter: Mateo Lopez Espejo
|
May 4 |
S. Musall, M.T. Kaufman, S. Gluf, A. Churchland. (2018) Movement-related activity dominates cortex during sensory-guided decision making. bioRxiv. DOI: 10.1101/306019 PDF
Presenter: Zack Schwartz
|
May 11 |
C. Stringer, M. Pachitariu, N. Steinmetz, C.B. Reddy, M. Carandini, K.D. Harris. (2018) Spontaneous behaviors drive multidimensional, brain-wide population activity. bioRxiv. DOI: 10.1101/306019 PDF
Presenter: Charlie Heller |
May 18 |
No meeting
|
May 25 |
Allen Brain Observatory Tour
http://observatory.brain-map.org/visualcoding
Presenter: Alex Dimitrov
|
June 8 |
O. Yuzgec, M. Prsa, R. Zimmermann, D. Huber. (2018) Pupil size coupling to cortical states protects the stability of deep sleep via parasympathetic modulation. Current Biology - February 5, 2018, doi: 10.1016/j.cub.2017.12.049 PDF
Presenter: Daniela Saderi |
June 15 |
B. Herrmann and I.S. Johnsrude (2018). Neural signatures of the processing of temporal patterns in sounds. bioRxiv May 7, DOI: 10.1101/261271 PDF
Presenter: Jesyin Lai
|
Winter 2018
Date | Paper |
January 12 |
Y. I. Fishman, M. Kim, and M. Steinschneider (2017). A Crucial Test of the Population Separation Model of Auditory Stream Segregation in Macaque Primary Auditory Cortex. J Neuosci Nov 37:44 doi:10.1523/JNEUROSCI.0792-17.2017 - PDF
Presenter: Luke Shaheen
|
January 26 |
K.J. Miller, M.M. Botvinick, and C.D. Brody (2018). Value representations in orbitofrontal cortex drive learning, but not choice bioRxiv Jan 10, 2018 doi: https://doi.org/10.1101/245720 - PDF
Presenter: Daniela Saderi
|
February 23 |
A.M. Ni, D.A. Ruff, J.J. Alberts, J. Symmonds, M.R. Cohen (2018). Learning and attention reveal a general relationship between population activity and behavior Science Jan 26;359(6374):463-465. doi: 10.1126/science.aao0284 - PDF
Presenter: Zack Schwartz
|
Fall 2017 |
Date | Paper |
September 29 |
A Uematsu, BZ Tan, EA Ycu, JS Cuevas, J Koivumaa, F Junyent,
EJ Kremer, IB Witten, K Deisseroth, JP Johansen (2017). Modular organization of the brainstem noradrenaline
system coordinates opposing learning states. Nature Neuroscience. Advanced online publication. doi:10.1038/nn.4642
- PDF
Presenter: Daniela Saderi
|
October 6 |
J. Feng and Wang (2017). Harmonic template neurons in primate auditory cortex
underlying complex sound processing. PNAS. doi:10.1073/pnas.1607519114
- PDF - Supplementary Information
Presenter: Luke Shaheen
|
October 13 |
J. Lai, E.L. Bartlett (2017). Age-related decline in behavioral discrimination of amplitude modulation frequencies compared to envelope-following responses. bioRxiv. Preprint doi: https://doi.org/10.1101/193268
- PDF
Presenter: Jesyin Lai
|
October 20 |
C.T. Anderson, M. Kumar, S. Xiong, T. Tzounopoulos (2017). Cell-specific gain modulation by synaptically released zinc in cortical circuits of audition. eLIFE. Sep 9;6. pii: e29893. doi: 10.7554/eLife.29893. - PDF
Presenter: Douglas Zeppenfeld
|
October 27 |
S. Tajima, K. Koida, C. I. Tajima, H. Suzuki, K. Aihara, H. Komatsu (2017). Task-dependent recurrent dynamics in visual cortex. eLIFE. Jul 24;6. pii: e26868. doi: 10.7554/eLife.26868. - PDF
Presenter: Charlie Heller
|
November 3 |
K. Tamura, M. Takeda, R. Setsuie, T. Tsubota, T. Hirabayashi, K. Miyamoto, Y. Miyashita (2017). Conversion of object identity to object-general semantic value in the primate temporal cortex. Science. Aug 18;357(6352):687-692. doi: 10.1126/science.aan4800. - PDF
Presenter: Mateo Lopez-Espejo
|
November 10 |
No Meeting
(SfN)
|
November 17 |
No Meeting
|
November 24 |
No Meeting
|
December 1 |
M. Lovett-Barron, A. S. Andalman, W. E. Allen, S. Vesuna, I. Kauvar, V. M. Burns, K. Deisseroth (2017). Ancestral circuits for the coordinated modulation of brain state. Cell 171:1-13. - PDF
Presenter: Zack Schwartz
|
Summer 2017 |
Date | Paper |
June 23 |
A. Stigliani, B. Jeska, & K. Grill-Spector (2017). An encoding model of temporal processing in human visual cortex. bioRxiv. February 15. doi: http://dx.doi.org/10.1101/108985
- PDF
Presenter: Jesyin Lai
|
June 30 |
W. Guo, A.R. Clause, A. Barth-Maron, D.B. Polley (2017). A corticothalamic circuit for dynamic switching between feature detection and discrimination. Neuron. Jun 14. doi: 10.1016/j.neuron.2017.05.019
- PDF
Presenter: Luke Shaheen
|
July 21 |
S. Sabbah, J.A. Germmer, A. Bhatia-Lin, G. Manoff, G. Castro, J.K. Siegel, N. Jeffery & D.M. Berson (2017). A retinal code for motion along the gravitational and body axes. Nature. Jun 22;546(7659):492-497 - PDF
Presenter: Douglas Zeppenfeld
|
August 11 |
H.K. Kato, S.K. Asinof, J.S. Isaacson (2017). Network-level control of frequency tuning in Auditory Cortex. Neuron. Jul 19;95(2):412-423 - PDF
Presenter: Mateo Lopez-Espejo
|
September 1 |
Y. Xie, C. Nie, and T. Yang (2017). Covert Shift of Attention Modulates the Value Encoding in the Orbitofrontal Cortex. bioRxiv (Neuroscience). Aug 29;doi: http://dx.doi.org/10.1101/181784 - PDF
Presenter: Daniela Saderi
|
September 15 |
K.S. Henry, K.S. Abrams, J. Forst, M.J. Mender, E.G. Neilans, F. Idrobo, L.H. Carney (2017). Midbrain synchrony to envelope structure supports behavioral sensitivity to single-format vowel-like sounds in noise. JARO. Feb;18(1): 165-181 - PDF
Presenter: Jesyin Lai
|
Archive: Spring 2017 |
Date | Paper |
Mar 17 |
J. Clemens, C.C. Giardin, P. Coen, X. Guan, B.J. Dickson, M. Murthy (2015).
Connecting neural codes with behavior in the auditory system of Drosophila. Neuron
87:1332-1343. - PDF -
Preview
Presenter: Zack Schwartz
|
Mar 24 |
D.E. Winkowski, D.A. Nagode, K.J. Donaldson, P. Yin,S.A. Shamma, J.B. Fritz, P.O. Kanold (2017). Orbitofrontal cortex neurons respond to sound and activate primary auditory cortex neurons. Cerebral Cortex - Jan 8. doi: 10.1093/cercor/bhw409. - PDF
Presenter: Ulysses Duckler
|
Mar 31 |
D.E. Wilson, G.B. Smith, A.L. Jacob, T. Walker, J. Dimidschstein, G. Fishell, D. Fitzpatrick (2017). GABAergic Neurons in Ferret Visual Cortex Participate in Functionally Specific Networks. Neuron - Mar 8;93(5):1058-1065. - PDF
Presenter: All
|
Apr 7 |
A. Giovannucci, A. Badura, B. Deverett, F. Najafi, T.D. Pereira, Z. Gao, I. Ozden, A.D. Kloth, E. Pnevmatikakis, L. Paninski, C.I De Zeeuw, J.F. Medina & S. S-H Wang (2017). Cerebellar granule cells acquire a widespread
predictive feedback signal during motor learning. Nature Neuroscience - Mar 20. doi: 10.1038/nn.4531. - PDF
Presenter: Douglas Zeppenfeld
|
Apr 28 |
K.C. Puvvada, J.Z. Simon (2017). Cortical representations of speech in a multi-talker auditory scene. BioRxiv - Apr. 26 doi: http://dx.org/10.1101/124750. - PDF
Presenter: Daniela Saderi
|
May 19 |
L.I. Schmitt, R.D. Wimmer, M. Nakajima, M. Happ, S. Mofakham, M.M. Halassa (2017). Thalamic amplification of cortical connectivity sustains attentional control. Nature. Online 03 May 2017. doi: 10.1038/nature22073. - PDF
Presenter: Daniela Saderi
|
May 26 |
D. Aronov, R. Nevers, D.W. Tank (2017). Mapping of a non-spatial dimension by the hippocampal-entorhinal circuit. Nature. Mar 29;543(7647):719-722. doi: 10.1038/nature21692. - PDF
Presenter: Stephen David
|
June 9 |
Singla S, Dempsey C, Warren R. Enikolopov & Sawtell NB (2017). A cerebellum-like circuit in the auditory system cancels responses to self-generated sounds. Nature Neuroscience. May 22. doi: 10.1038/nn.4567. - PDF
Presenter: Douglas Zeppenfeld
|
June 16 |
Y. Han, J.M. Kebschull, R.A.A. Campbell, D. Cowan, F. Imhof, A.M. Zador, T.D. Mrsic-Flogel (2017). A single-cell anatomical blueprint for intracortical information transfer from primary visual cortex. bioRxiv. June 9.
http://dx.doi.org/10.1101/148031
- PDF
Presenter: Daniela Saderi
|
Archive: Winter 2016 |
Date | Paper |
January 13 |
B. L. Robinson, N. S. Harper & D. McAlpine (2016). Meta-adaptation in the auditory midbrain under cortical influence Nature Communications Nov 24;7:13442 - PDF
Presenter: Daniela Saderi
|
January 20 |
S. Kato, H.S. Kaplan,T. Schrödel, S. Skora, T.H. Lindsay, E. Yemini,S. Lockery, and M. Zimmer (2015). Global brain dynamics embed the motor command sequence of Caenorhabditis elegans. Cell Oct 22;163(3):656-69 - PDF
Presenter: All
|
January 27 |
TBA
Presenter: Erick Gallun
|
Feb 13 |
ARO - No meeting
|
Feb 24 |
V.C. Caruso, J.T. Mohl, C. Glynn, J. Lee, S. Willett, A. Zaman, R. Estrada, S. Tokdar, J.M. Groh (2017). Evidence for time division multiplexing of multiple simultaneous items in a sensory coding bottleneck bioRxiv Feb. 9, 2017 doi: http://dx.doi.org/10.1101/107185 - PDF
Presenter: Jean Lienard
|
Feb 27 |
**NGP Recruitment** 2:15PM Vollum 4M. K.V. Kuchibhotla, J.V. Gill, G.W. Lindsay, E.S. Papadoyannis, R.E. Field, T.A. Hindmarsh Sten, K.D. Miller & R.C. Froemke (2017). Parallel processing by cortical inhibition enables context-dependent behavior. Nature Neuroscience - Jan;20(1):62-71 - PDF
Presenter: Daniela Saderi
|
Mar 3 |
C. Stringer, M. Pachitariu, N.A. Steinmetz, M. Okun, P. Bartho, K.D. Harris, M. Sahani, N.A. Lesica (2016). Inhibitory control of correlated intrinsic variability in cortical networks. eLife - Dec 7;5. pii: e19695. - PDF
Presenter: Charlie Heller
|
Archive: Fall 2016 |
Date |
Paper |
September 9 |
N. C. Rabinowitz, R. L. Gorris, M. Cohen, E. P. Simoncelli (2015). Attention stabilizes the shared gain of V4 populations eLIFE 4:e08998. - PDF
Presenter: Stephen David
|
September 30 |
M. F. Glasser, T. S. Coalson, E. C. Robinson, C. D. Hacker, J. Harwell, E. Yacoub,
K. Ugurbil, J. Andersson, C. F. Beckmann, M. Jenkinson, S. M. Smith, D. C. Van Essen (2016). A multi-modal parcellation of human cerebral cortex. Nature 536: 171–178 - PDF
Presenter: Zack Schwartz
|
October 21 |
J. S. Wu, E. D. Young, E. Glowatzki (2016). Maturation of spontaneous firing properties after hearing ontset in rat auditory nerve fibers: spontaneous rates, refractoriness, and interfiber correlations. The Journal of Neuroscience 36(41):10584-10597 - PDF
Presenter: Sean Slee
|
October 28 |
R.D. Wimmer, L.I. Schmitt, T.J. Davidson, M. Nakajima, K. Deisseroth, M.M. Halassa (2015). Thalamic control of sensory selection in divided attention. Nature 526(7575):705-9 - PDF
Presenter: Daniela Saderi
|
December 2 |
P. Lakatos, A. Barczak, S.A. Neymotin, T. McGinnis, D. Ross, D.C. Javitt, M.N. O'Connell (2016). Global dynamics of selective attention and its lapses in primary auditory cortex. Nature Neuroscience 19:1707-1717 - PDF
Presenter: Luke Shaheen
|
December 9 |
T.A. Engel, N.A. Steinmetz, M.A. Gieselmann, A. Thiele, T. Moor, K. Boahen (2016). Selective modulation of cortical state during spatial attention. Science Vol. 354, Issue 6316, pp. 1140-1144 - PDF - Supplementary Material
Presenter: All
|
Archive: Spring 2016 |
Date |
Paper |
April 1 |
J. K. Baruni, B. Lau, & C. D. Salzman (2015). Reward expectation differentially modulates attentional behavior and activity in visual area V4. Nat. Neuroscience Nov;18(11):1656-63 - PDF
Background: J.H.R. Maunsell (2004). Neuronal representations of cognitive state: reward or attention? Trends Cog. Sci. June 8(6):261-5 - PDF
Presenter: Zack Schwartz
|
April 8 |
Y. Chen, S. Martinez-Conde, S. L. Macknik, Y. Bereshopolova, H. A. Swadlow, J. M. Alonso (2008). Task difficulty modulates the activity of specific neuronal populations in primary visual cortex. Nat. Neuroscience Aug;11(8):974-82 - PDF
Presenter: Daniela Saderi
|
April 15 |
S. Ohmae & J. F. Medina (2015). Climbing fibers encode a temporal-difference prediction error during cerebellar learning in mice. Nat. Neuroscience Dec;18(12):1798-803 - PDF
Presenter: Luci Moore
|
April 22 |
G. A. Matthews et al., (2016). Dorsal raphe dopamine neurons represent the experience of social isolation. Cell Feb 11;164(4):617-31 - PDF
Presenter: Jeffrey Tang
|
April 29 |
D. Vallentin, G. Kosche, D. Lipkind, M. A. Long (2016). Inhibition protects acquired song segments during vocal learning in zebra finches. Science Jan 15;351(6270):267-71 - PDF
- Supplementary Materials
Presenter: Sami Friedrich
|
May 13 |
A.G. Huth, W.A. de Heer, F.E. Theunissen, J.L. Gallant (2016). Natural speech reveals the semantic maps that tile human cerebral cortex. Nature Apr 28;532(7600):453-8 - PDF
- Supplementary Information
Presenter: Daniela Saderi
|
May 27 |
H. Hong, D.L. Yamins, N.J. Majaj, J.J. DiCarlo (2016). Explicit information for category-orthogonal object properties increases along the ventral stream. Nature Neuroscience Apr;19(4):613-22 - PDF
- Supplementary Information
Presenter: Alex Dimitrov
|
June 3 |
**BEHN-NGP Seminar Series** - Leah Krubitzer, PhD - "Cortical plasticity within and across lifetime" - 4PM Vollum M1441 Flyer
|
June 10 |
D.E. Mitchell, C.C. Della Santina, K.E. Cullen (2016). Plasticity within non-cerebellar pathways rapidly shapes motor performance in vivo. Nature Communications May 9;7:11238 - PDF
Presenter: Tim Balmer
|
June 17 |
J.P. Mayo and J.H.R Maunsell (2016). Graded neuronal modulations related to visual spatial attention. The Journal of Neuroscience May 11;36(19):5353-61 - PDF
Presenter: Daniela Saderi
|
Archive: Winter 2016 |
Date |
Paper |
January 8 |
J.D. Yao, P. Bremen, J.C. Middlebrooks (2015). Emergence of spatial stream segregation in the auditory pathway. J. Neurosci. Dec 9;35(49):16199-212 - PDF
Presenter: Daniela Saderi
|
January 15 |
J. Tsunada, A.S.K. Liu, J.I. Gold, Y.E. Cohen (2016). Causal contribution of primate auditory cortex to auditory perceptual decision-making. Nature Neuroscience Jan;19(1):135-142 - PDF
Presenter: Zack Schwartz
|
January 22 |
G. Fuhrmann, I. Segev, H. Markram, and M. Tsodyks (2002). Coding of temporal information by activity-dependent synapses J. Neurophysiol. Jan;87(1):140-8. - PDF
Presenter: Luci Moore
|
January 29 |
N. Ding, L. Melloni, H. Zhang, X. Tian, D. Poeppel (2016). Cortical tracking of hierachical linguistic structures in connected speech Nat. Neurosci. Jan;19(1):158-64. - PDF
- Supplementary Information
Presenter: Sean Slee
|
February 5 |
N. Barascud, M. T. Pearce, T. D. Griffiths, K. J. Friston, and M. Chait (2016) . Brain responses in humans reveal ideal observer-like sensitivity to complex acoustic patterns PNAS Jan 19. pii: 201508523. - PDF
Presenter: Daniela Saderi
|
February 12 |
A. R. Chambers, J. Resnik, Y. Yuan, J. P. Whitton, A. S. Edge, M. C. Liberman, D. B. Polley (2016). Central gain restores auditory processing following near-complete cochlear denervation. Neuron Jan 28. pii: S0896-6273(15)01169-1. doi: 10.1016/j.neuron.2015.12.041. [Epub ahead of print] - PDF
Presenter: Brad Buran
|
February 19 |
No Meeting (ARO)
|
March 11 |
**BEHN-NGP Seminar Series** - Pat Levitt, PhD - PDF
|
March 18 |
I. M. Park, M. L. R. Meister, A. C. Huk & J. W. Pillow (2014). Encoding and decoding in parietal cortex during sensorimotor decision-making. Nature Neuroscience Oct;17(10):1395-403 - PDF
Presenter: All (Stephen David)
|
Archive: Fall 2015 |
Date |
Paper |
September 25 |
B. Hangya, S.P. Renade, M. Lorenc, A. Kepecs (2015). Central cholinergic neurons are rapidly recruited by reinforcement feedback. Cell Aug 27;162(5):1155-68. - PDF
Presenter: Zack Schwartz
|
October 2 |
R.S. Williamson, K.E. Hancock, B.G. Shinn-Cunningham, D.B. Polley (2015). Locomotion and Task Demands Differentially Modulate Thalamic Audiovisual Processing during Active Search. Curr. Biol. Jul 20;25(14):1885-91 - PDF
Presenter: Daniela Saderi
|
October 9 |
P.T. Sadtler, K.M. Quick, M.D. Golub, S.M. Chase, S.I. Ryu, E.C. Tyler-Kabara, B.M. Yu, A.P. Batista (2014). Neural constraints on learning. Nature Aug 28;512(7515):423-6 - PDF
Presenter: Stephen David
|
October 16 |
No Meeting (SfN)
|
October 23 |
J.D. Downer, M. Niwa, M.L. Sutter (2015). Task engagement selectively modulates neural correlations in primary auditory cortex. J. Neurosci. May 13;35(19):7565-74 - PDF
- JC Article
Presenter: Sean Slee
|
October 30 |
No Meeting |
November 6 |
R. Coen-Cagli, A. Kohn & O. Schwartz (2015). Flexible gating of contextual influence in natural vision. Nature Neuroscience Nov;18(11):1648-55. - PDF
Presenter: Daniela Saderi
|
November 13 |
R. L. T. Goris, J. A. Movshon, E. P Simoncelli (2014). Partitioning neuronal variability. Nature Neuroscience June;17(6):858-65. - PDF
- News & views
Presenter: Zack Schwartz
|
November 20 |
C.H. Keller, T.T. Takahashi (2015). Spike timing precision changes with spike rate adaptation in the owl's auditory space map. J. Neurophysiol. Oct;114(4):2204-19. - PDF
Presenter: Alex Dimitrov
|
November 27 |
No Meeting (Thanksgiving) |
December 4 |
H.K. Kato, S.N. Gillet, J.S. Isaacson (2015). Flexible sensory representations in auditory cortex driven by behavioral relevance Neuron Nov 11. pii: S0896-6273(15)00918-6. doi: 10.1016/j.neuron.2015.10.024. [Epub ahead of print] - PDF
Presenter: Tim Balmer
|
December 11 |
K. Reinhold, A.D. Lien, M. Scanziani (2015). Dinstict recurrent versus afferent dynamics in cortical visual processing. Nat. Neurosci. Dec;18(12):1789-97. doi: 10.1038/nn.4153. [Epub ahead of print] - PDF - News & Views
Presenter: Sami Friedrich
|
December 18 |
N. Chen, H. Sugihara, & M. Sur (2015). An acetylcholine-activated microcircuit drives temporal dynamics of cortical activity. Nat. Neurosci. Jun;18(6):892-902. - PDF
Presenter: Jefferey Tang
|
Archive: Summer 2015 |
Date |
Paper |
June 23 |
M.J. McGinley, S.V. David, D.A. McCormick (2015). Cortical membrane potential signature of optimal states for sensory signal detection. Neuron In Press - PDF
Presenter: All
|
June 30 |
G.H. Otazu, H. Chae, M.B. Davis, and D.F. Albeanu (2015). Cortical feedback decorrelates olfactory bulb output in awake mice. Neuron Jun 17;86(6):1461-77. - PDF
Presenter: All
|
July 7 |
L.F. Abbott, J.A. Varela, K. Sen, S.B. Nelson (1997). Synaptic depression and cortical gain control. Science Jan 10;275(5297):220-4. - PDF
Presenter: All
|
July 14 |
K.P Walsh, E.G. Pasanen, D. McFadden (2015). Changes in otoacoustic emissions during selective auditory and visual attention. J. Acoust Soc Am May;137(5):2737. - PDF
Presenter: All
|
July 21 |
No Meeting
|
July 28 |
No Meeting
|
Aug 4 |
J.S. Rothman, L. Cathala, V. Steuber & R.A. Silver (2009). Synaptic depression enables neuronal gain control. Science Feb 19;457(7232):1015-8. - PDF
Presenter: All
|
Aug 11 |
A. Friedman, D. Homma, L.G. Gibb, K. Amemori, S.J. Rubin, A.S. Hood, M.H. Riad, A.M. Graybiel (2015). A corticostriatal path targeting striosomes controls decision-making under conflict. Cell Jun 4;161(6):1320-33. - PDF
Preview: N. Kolling, M.F.S. Rushworth (2015). What's worth the risk? A neural circuit for trade-offs. Cell Jun 4;161(6):1243-4. - PDF
Presenter: All
|
Aug 18 |
No Meeting
|
Aug 25 |
D.Y. Takahashi, A.R. Fenley, Y. Teramoto, D.Z. Narayanan, J.I. Borjon, P. Holmes, A.A. Ghazanfar (2015). The developmental dynamics of marmoset monkey vocal production. Science Aug 14; 349(6249):734-8. - PDF
Presenter: All
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Archive: Spring 2015 |
Date |
Paper |
April 10 |
N. Ulanovsky, L. Las and I. Nelken (2003). Processing of low-probability sounds by cortical neurons. Nature Neuroscience Apr;6(4):391-8 - PDF
Presenter: Daniela Saderi
|
April 17 |
3:30 PM - Vollum M1441- OHRC Seminar: "Neural pathways for auditory cognition in rodents". PDF
Presenter: Santiago Jaramillo
|
April 24 |
M. Okun, N.A. Steinmetz, L. Cossell, M.F. Iacaruso, H. Ko, P. Bartho, T. Moore, S.B. Hofer, T.D. Mrsic-Flogel, M. Carandini & K.D. Harris (2015). Diverse coupling of neurons to populations in
sensory cortex. Nature Apr. 6 doi:10.1038/nature14273- PDF
Background: M.L. Scholvinck, A.B. Saleem, A. Benucci, K.D. Harris, M. Carandini (2015). Cortical state determines global variability and correlations in visual cortex. The Journal of Neuroscience Jan 7;35(1):170-8 - PDF
Presenter: Alex Dimitrov
|
May 1 |
R. Xie, J.X. Gittelman, G.D. Pollak (2007). Rethinking tuning: in vivo whole-cell recordings in the inferior colliculus in awake bats. The Journal of Neuroscience Aug 29;27(35):9469-81 - PDF
Presenter: Luci Moore
|
May 8 |
V. de Lafuente, R. Romo (2005). Neuronal correlates of subjective sensory experience. Nature Neuroscience Dec;8(12):1698-703 - PDF
Presenter: Nora Hammack
|
May 15 |
H. Asari & M. Meister (2012). Divergence of visual channels in the inner retina. Nature Neuroscience Nov;15(11):1581-9 - PDF
Presenter: Ben Murphy-Baum
|
May 22 |
R. Kiani and M.N. Shadlen (2009). Representation of Confidence Associated with a Decision by Neurons in the Parietal Cortex. Science May 8;324(5928):759-64 - PDF
Presenter: Daniela Saderi
|
May 29 |
No Meeting
|
June 5 |
Q. Xiong, P. Znamenskiy, A.M. Zador (2015). Selective corticostriatal plasticity during acquisition of an auditory discrimination task. Nature May 21;521, 348-351 - PDF
Presenter: Hsin-Wei
|
June 12 |
T.Z. Luo and J.H.R. Maunsell (2015). Neuronal modulations in visual cortex are associated with only one of multiple components of attention. Neuron Jun 3;86(5):1182-8 - PDF
Presenter: Daniela Saderi
|
Archive: Winter 2015 |
Date |
Paper |
January 9 |
M. Elihali, L. Ma, C. Micheyl, A.J. Oxenham, and S.A. Shamma (2009). Temporal coherence in the perceptual organization and cortical representation of auditory scenes. Neuron 61, 317-329. - PDF
Presenter: Zack Schwartz
|
January 23 |
M. Xue, B.V. Atallah, M. Scanziani (2014). Equalizing excitation-inhibition ratios across visual cortical neurons. Nature 511:596-600. - PDF
Presenter: Daniela Saderi
|
February 6 |
K.I. Nagel, E.J. Hong, R.I. Wilson (2014). Synaptic and circuit mechanisms promoting broadband transmission of olfactory stimulus dynamics. Nature Neuroscience 18(1):56-65. - PDF
Presenter: Hsin-Wei
|
March 13 |
Numenta (2011). Hierarchical Temporal Memory (including HTM Cortical Learning Algorithms. PDF
Presenter: Sandy Dash
|
March 27 |
P.H. Delano, D. Elgueda, C.M. Hamame, L. Robles (2007). Selective attention to visual stimuli reduces cochlear sensitivity in Chinchillas. Journal of Neuroscience 27(15):4146-53. PDF
Presenter: Brad Buran
|
Archive: Fall 2014 |
Date |
Paper |
October 3 |
D.M. Schneider, A. Nelson, R. Mooney. (2014) A synaptic and circuit basis for corollary discharge in the auditory cortex. Nature. 513(7517):189-94. - PDF
Presenter: Daniela Saderi
|
October 10 |
R.L. Redondo, J. Kim, A.L. Arons, S. Ramirez, X. Liu,
S. Tonegawa. (2014) Bidirectional switch of the valence associated
with a hippocampal contextual memory engram. Nature. 513: 426-430. - PDF
Background: S. Ramirez, S. Tonegawa and X. Liu. (2014) Identification and optogenetic manipulation of memory engrams in the hippocampus. Front. Behav. Neurosci.. 17;7:226. - PDF
Presenter: Zack Schwartz |
October 17 |
C.C. Rodgers, M.R. DeWeese (2014) Neural correlates of task switching in prefrontal cortex and primary auditory cortex in a novel stimulus selection task for rodents. Neuron 82: 1157-70. - PDF - News & views
Presenter: Sean Slee
|
October 24 |
C. DiMattina, K. Zhang (2013) Adaptive stimulus optimization for sensory systems neuroscience. Front Neural Circuits 7:101. - PDF
Presenter: Alex Dimitrov
|
November 7 |
J. Reimer, E Froudarakis, C.R. Cadwell, D. Yatsenko, G.H. Denfield, and A.S. Tolias (2014) Pupil fluctuations track fast switching of cortical states during quiet wakefulness. Neuron 84, 355-362. - PDF - News & views
Presenter: All
|
December 5 |
M. Pecka, Y. Han, E. Sader, and T. D. Mrsic-Flogel (2014) Experience-dependent specialization of receptive-field surround for selective coding of natural scenes. Neuron 84, 457-469. - PDF
Presenter: All
|
December 19 |
M.N. O'Connell, A. Barczak, C.E. Schroeder, P. Lakatos (2014) Layer specific sharpening of frequency tuning by selective attention in primary auditory cortex. Journal of Neuroscience. 34(49):16496-508. PDF
Presenter: Daniela Saderi
|
Archive: Summer 2014 |
Date |
Paper |
July 18 |
J.L. Herrero, M.J. Roberts, L.S. Delicato, M.A. Gieselmann, P. Dayan, A. Thiele (2008) Acetylcholine contributes through muscarinic receptors to attentional modulation in V1. Nature. 454: 1110-4. - PDF
Background: K.D. Harris & A. Thiele (2011) Cortical state and attention. Nature Reviews Neuroscience. 12: 509-23. - PDF
Presenter: Zack Schwartz
|
July 25 |
P. Znamenskiy, A.M. Zador. (2013) Corticostriatal neurons in auditory cortex drive decisions during auditory discrimination. Nature. 497: 482-5. PDF
Presenter: Daniela Saderi
|
August 1 |
V. Mante, D. Sussillo, K.V. Shenoy & W.T. Newsome (2013) Context-dependent computation by recurrent dynamics in prefrontal cortex. Nature. 7;503(7474):78-84. - PDF
Presenter: Hillary Rodgers
|
August 8 |
No meeting
| August 15 |
A.R. Chambers, K.E. Hancock, K. Sen, D.B. Polley (2014) Online stimulus optimization rapidly reveals multidimensional selectivity in auditory cortical neurons. J. Neurosci.. 34(27):8963-75 - PDF
Presenter: Jean Lienard
|
Archive: Spring 2014 |
Date |
Paper |
April 4 |
A. Kennedy, G. Wayne, P. Kaifosh, K. Alvina, L.F.Abbott, N.B. Sawtell. (2014) A temporal basis for predicting the sensory consequences of motor commands in an electric fish. Nature Neuroscience. 17: 416-422. - PDF
Presenter: Carol Glogowski |
April 11 |
Alexander Borst & Frederic E. Theunissen. (1999) Information theory and neural coding. Nature Neuroscience. 2: 947-57. - PDF
Presenter: Alex Dimitrov |
April 18 |
No meeting |
April 25 |
G. Chechik, M.J. Anderson, O. Bar-Yosef, E.D. Young, N. Tishby, I. Nelken. (2006) Reduction of information redundancy in the ascending auditory pathway.
Neuron. 51(3):359-68.
- PDF
- News & views
Presenter: Zack Schwartz |
May 2 |
P. Coen, J. Clemens, A.J. Weinstein, D.A. Pacheco, Y. Deng, M. Murthy (2014)
Dynamic sensory cues shape song structure in Drosophila. Nature. 507(7491):233-7.
- PDF
Presenter: Hsin-Wei Lu |
May 9 |
S. Liu, Y. Gu, G.C. DeAngelis, D.E. Angelaki. (2013)
Choice-related activity and correlated noise in subcortical vestibular neurons
Nature Neuroscience. 16(1):89-97.
- PDF
Presenter: Daniela Saderi |
May 16 |
A. Gdalyahu, E. Tring, P. Polack, R. Gruver, P. Golshani, M.S. Fanselow,
A.J. Silva, J.T. Trachtenberg. (2012) Associative Fear Learning Enhances Sparse Network Coding in Primary Sensory Cortex. 75(1):121-132.
- PDF
Presenter: Reena Clements |
May 23 |
R.M. Haefner, S. Gerwinn, J.H. Macke, M. Bethge. (2013) Inferring decoding strategies from choice probabilities in the presence of correlated variability. Nature Neuroscience. 16(2):235-42.
- PDF
Presenter: Everyone |
May 30 |
S.J. Tripathy, K. Padmanabhan, R.C. Gerkin, N.N. Urban. (2013) Intermediate intrinsic diversity enhances neural population coding. Proceedings of the National Academy of Sciences USA. 110(20):8248-53. - PDF
Presenter: Hillary Rodgers |
Archive: Winter 2014 |
Date |
Paper |
January 10 |
S.D. Wiederman & D.C. O'Carroll. (2013) Selective attention in an insect visual neuron. Current Biology 23: 156-61. - PDF
Presenter: Dan Yaeger |
January 17 |
L.S. Hamilton, J. Sohl-Dickstein, A.G. Huth, V.M. Carels, K. Deisseroth, S. Bao. (2013) Optogenetic Activation of an Inhibitory Network Enhances Feedforward Functional Connectivity in Auditory Cortex. Neuron 80: 1066-76. - PDF
Presenter: Daniela Saderi |
January 24 |
L.O. Sun et al. (2013) On and Off Retinal Circuit Assembly by Divergent Molecular Mechanisms. Science. 342 (6158) - PDF
Presenter: Reena Clements |
January 31 |
T.M. Centanni, A.M. Sloan, A.C. Reed, C.T. Engineer, R.L. Rennacker II, M.P. Kilgard (2014) Detection and identification of speech sounds using cortical activity patterns. Neuroscience. 258: 292-306. - PDF
Presenter: Jean Lienard |
February 7 |
No meeting (snow day) |
February 14 |
N. Mesgarani, E.F. Chang (2012) Selective cortical representation of attended speaker in multi-talker speech perception. Nature. 485: 233-236. - PDF
Presenter: Zack Schwartz |
February 21 |
No meeting (ARO) |
February 28 |
Z.V. Guo et al. (2014) Flow of cortical activity underlying a tactile decision in mice. Neuron. 81(1):179-94. - PDF
Presenter: Hsin-Wei Lu |
March 7 |
A. Zenon and R.J. Krauzlis. (2012) Attention deficits without cortical neuronal deficits. Nature. 489(7416) 434-7. - PDF
Presenter: Dan Yaeger |
March 14 |
L.Y. Li, X.R. Xiong, L.A. Ibrahim, W. Yuan, H.W. Tao, L.I. Zhang. (2014) Differential Receptive Field Properties of Parvalbumin and Somatostatin Inhibitory Neurons in Mouse Auditory Cortex. Cerbral Cortex. E-Pub pre-print.
- PDF
Presenter: Reena Clements |
March 21 |
C.I. Petkov, K.N. O'Connor, M.L. Sutter. (2007) Encoding of Illusory Continuity in Primary Auditory Cortex. Neuron. 54(1) 153-65. - PDF
Presenter: Daniela Saderi |
March 28 |
No meeting (Spring Break) |
Archive: Fall 2013 |
Date |
Paper |
October 4 |
M.M. Churchland et al. (2010) Stimulus onset quenches neural variability: a widespread cortical phenomenon. Nature Neuroscience. 13(3):369-78. - PDF
Presenter: Stephen David |
October 11 |
H. Ko, L. Cossell, C. Baragli, J. Antolik, C. Clopath, S. B. Hofer, T. D. Mrsic-Flogel. (2013) The emergence of functional microcircuits in visual cortex. Nature. 496: 96-100. - PDF
Presenter: Carol Glogowski |
October 18 |
S.P. Mysore, E.I. Knudsen. (2013) A shared inhibitory circuit for both exogenous and endogenous control of stimulus selection. Nature Neuroscience. 16(4): 473-478. - PDF
Background: S.P. Mysore, E.I. Knudsen. (2011) The role of a midbrain network in competitive stimulus selection. Curr Opin Neurobiol 21(4): 653-60. - PDF
Presenter: Sean Slee |
October 25 |
D. Bendor, X. Wang. (2005) The neuronal representation of pitch in primate auditory cortex.
Nature. 436:1161-5. - PDF
Presenter: Hsin-wei Lu |
November 1 |
S.Y. Takemura et al. (2013) A visual motion detection circuit suggested by Drosophila connectomics.
Nature. 500: 175-181. - PDF
Presenter: Zack Schwartz |
November 8 |
No meeting (Society for Neuroscience) |
November 15 |
S.E.J. de Vries et al. (2011) The Projective Field of a Retinal Amacrine Cell.
Journal of Neuroscience 31(23):8595-8604. - PDF
Presenter: Ben Murphy-Baum |
November 22 |
C.M. Constantinople, R.M. Bruno. (2013) Deep Cortical Layers Are Activated Directly by Thalamus.
Science. 340 1591-4. - PDF
Presenter: Reena Clements |
November 29 |
No meeting (Thanksgiving) |
December 6 |
R. Schmidt et al. (2013) Canceling actions involves a race between basal ganglia pathways.
Nature Neuroscience. 16(8):1118-24 - PDF
Presenter: Danielle Robinson |
December 13 |
HJ Pi et al. (2013) Cortical interneurons that specialize in disinhibitory control.
Nature. 503(7477):521-4 - PDF
Presenter: Daniela Saderi |
Further reading (and some ideas for future papers): |
| Interpretation of LFP signals in cortex M.W. Reimann, C.A. Anastassiou, R. Perin, S.L. Hill, H. Markram, C. Koch (2013) A Biophysically Detailed Model of Neocortical Local Field Potentials Predicts the Critical Role of Active Membrane Currents. Neuron 79: 375-390. - PDF
|
| Gain control and STRFs
N.C. Rabinowitz, B.D. Willmore, J.W. Schnupp, A.J. King. (2012) Spectrotemporal contrast kernels for neurons in primary auditory cortex. Journal of Neuroscience. 32(33):11271-84. - PDF
|
| Ferret Auditory Cortex
J.K. Bizley, F.R. Nodal, I. Nelken, A.J. King. (2005) Functional Organization of Ferret Auditory Cortex. Cerebral Cortex. 15: 1637-1653. - PDF
|
|
I. Nelken, J.K. Bizley, F.R. Nodal, B.Ahmed, J.W.H. Schnupp, A.J. King. (2004) Large-Scale Organization of Ferret Auditory Cortex Revealed Using Continuous Acquisition of Intrinsic Optical Signals. Journal of Neurophysiology. 92:2574-2588. - PDF
|
| Attention Reviews
J.H. Reynolds, L. Chelazzi. (2004) Attentional modulation of visual processing. Annual Review of Neuroscience. 27: 611.47. - PDF |
| J.B. Fritz, M. Elhilali, S.V. David, S.A. Shamma. (2007) Does attention play a role in dynamic receptive field adaptation to changing acoustic salience in A1? Hearing Research 229: 186.203. - PDF |
| M.C.-K. Wu, S.V. David, J.L. Gallant. (2006) Complete Functional Characterization of Sensory Neurons by System Identification. Annual Review of Neuroscience. 29:477.505.
- PDF |
| J.A. Mazer, W.E. Vinje, J. McDermott, P.H. Schiller, J.L. Gallant. (2002) Spatial frequency and orientation tuning dynamics in area V1. Proceedings of the National Academy of Sciences USA. 99(3): 1645-50. (Parametric reverse correlation) - PDF
|
|
S. Bandyopadhyay, L.A.J. Reiss, E.D. Young. (2007) Receptive Field for Dorsal Cochlear Nucleus Neurons at Multiple Sound Levels. Journal of Neurophysiolgy. 98: 3505.15. - PDF
|
|
P.C. Nelson, Z.M. Smith, E.D. Young. (2009) Wide-Dynamic-Range Forward Suppression in Marmoset Inferior Colliculus Neurons Is Generated Centrally and Accounts for Perceptual Masking. The Journal of Neuroscience. 29(8): 2553.62. - PDF
|
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Theunissen FE, Sen K, Doupe AJ. (2000) Spectral-temporal receptive fields of nonlinear auditory neurons obtained using natural sounds. Journal of Neuroscience. 20(6):2315-31. - PDF
|
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D.M. Schneider, S.M. Woolley. (2011) Extra-classical tuning predicts stimulus-dependent receptive fields in auditory neurons. Journal of Neuroscience. 31(33):11867-78. - PDF
|
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N.C. Rabinowitz, B.D. Willmore, J.W. Schnupp, A.J. King. (2012) Spectrotemporal contrast kernels for neurons in primary auditory cortex. Journal of Neuroscience. 32(33):11271-84. - PDF
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©2014 Stephen David |
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