Oregon Hearing Research Center, Oregon Health & Science University
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OHSU grad programs:
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NEUS 642
Systems Neuroscience JC (NEUS 606-07)
Meetings are every Friday at 4-5 pm (with occasional breaks between quarters) in the conference room of MRB 9th floor unless otherwise noted.
Mailing list signup: mailman.ohsu.edu
Course info: NGP course list
Archive:
2013 -
2014 -
2015 -
2016 -
2017 -
2018 -
Spring 2019 -
Fall 2019 -
Winter 2020
| Date | Paper |
| January 17 | Whitepaper: Allen Brain Observatory – Neuropixels Visual Coding. October 2019 Data Release. -
PDF Neuropixels data site: https://portal.brain-map.org/explore/circuits/visual-coding-neuropixels Presenter: Alex Dimitrov |
| February 14 | S.C. Seeman et al. (2018) Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex. Elife. 7:e37349.
PDF Ephys data site: https://portal.brain-map.org/explore/connectivity/synaptic-physiology Presenter: Jake Pennington |
| March 27 | N.A. Steinmetz, P. Zatka-Haas, M. Carandini, K.D. Harris (2019)
Distributed coding of choice, action and engagement across the mouse brain.
Nature. 576: 266–73.
PDF Presenter: Stephen David |
| April 3 | O.I. Rumyantsev ... M.J. Schnitzer (2020)
Fundamental bounds on the fidelity of sensory cortical coding
Nature. E-pub. https://doi.org/10.1038/s41586-020-2130-2
PDF Presenter: Charlie Heller |
| Date | Paper |
| October 4 | S. Bagur, M. Averseng, D. Elgueda, S. David, J. Fritz, P. Yin, S. Shamma,
Y. Boubenec, S. Ostojic (2018)
Go/no-go task engagement enhances population representation of target stimuli in primary auditory cortex.
Nature Commnications. 9: 2529. DOI: 10.1038/s41467-018-04839-9 -
PDF Presenter: Charlie Heller |
| October 11 | JZ See, CA Atencio, VS Sohal, CE Schreiner (2018)
Coordinated neuronal ensembles in primary auditory cortical columns.
eLIFE. 7:e35587. DOI: 10.7554/eLife.35587 -
PDF Presenter: Stephen David |
| October 18 | SFN, no meeting |
| November 1 | C.R. Ponce, W. Xiao, P.F. Schade, T.S. Harmann, G. Kreiman, M.S. Livingstone. (2019)
Evolving Images for Visual Neurons Using a Deep Generative Network Reveals Coding Principles and Neuronal Preferences.
Cell. 177(4): 999-1009. DOI: 10.1016/j.cell.2019.04.005 -
PDF Presenter: Greg Hamersky |
| November 22 | O. Dal Monte, C-C.J. Chu, N.A. Fagan, S.W.C. Chang. (2019) Specialized medial prefrontal-amygdala coordination in other-regarding decision preference. bioRxiv. 640292. DOI: 10.1101/640292 Presenter: Jeremiah Morrow |
| November 29 | No Meeting (Thanksgiving) |
| Date | Paper |
| April 5 | G.T. Neske and D.A. McCormick (2018) Distinct waking state for strong evoked respones in primary visual cortex and optimal visual detection performance. bioRxiv Oct 8, DOI: 10.1101/437681v1 -
PDF Presenter: Zach Schwartz |
| April 12 | D. Elgueda, D. Duque, S. Radtke-Schuller, P. Yin, S.V. David , S.A. Shamma and J.B. Fritz. (2019) State-dependent encoding of sound and behavioral meaning in a tertiary region of the ferret auditory cortex. Nature Neuroscience. 22: 447–459. DOI: 10.1038/s41593-018-0317-8 -
PDF Presenter: Stephen David |
| April 19 | TBD Presenter: TBD |
| Date | Paper |
| June 22 | L. Shaheen & M.C. Liberman (2018) Effects of cochlear synaptopathy on spontaneous and sound-evoked activity in the mouse inferior colliculus bioRxiv Aug 06, DOI: 10.1101/381087-
PDF Presenter: Luke Shaheen |
| June 22 | J. Zylberberg (2018) The Role of Untuned Neurons In Sensory Information Coding bioRxiv May 30, DOI: 10.1101/134379-
PDF Background for noise correlations: B.B. Averbeck. P.E. Lathan and A. Pouget (2006) Neural correlations, population coding and computation, Nature May 2006. PDF Presenter: Alexander Dimitrov |
| July 13 | Elina A. K. Jacobs, Nicholas A. Steinmetz, Matteo Carandini, Kenneth D. Harris (2018). Cortical state fluctuations during sensory decision making. bioRxiv June 16, 2018, DIO: 10.1101/348193-
PDF Presenter: Mateo Lopez Espejo |
| July 20 | Jeffrey L. Gauthier and David W. Tank (2018). A dedicated population for reward coding in the hippocampus. Neuron DOI: 10.1016/j.neuron.2018.06.00a PDF Preview Presenter: Zack Schwartz |
| Date | Paper |
| April 20 | M.M. Asokan, R.S. Williamson, K.E. Hancock, D.B. Polley (2017). Dynamic gain adjustments in descending corticofugal outputs from auditory cortex compensate for cochlear nerve synaptic damage bioRxiv Jul 13, doi: http://dx.doi.org/10.1101/162909- PDF Presenter: Jesyin Lai |
| April 27 | A. Sheikhattar, S. Miran, J. Liu, J.B. Fritz, S.A. Shamma, P.O. Kanold, B. Babadi (2018). Extracting Neuronal Functional Network Dynamics Via Adaptive Granger Causality Analysis. PNAS April 9, 2018, doi: https://doi.org/10.1073/pnas.1718154115- PDF Presenter: Mateo Lopez Espejo |
| May 4 | S. Musall, M.T. Kaufman, S. Gluf, A. Churchland. (2018) Movement-related activity dominates cortex during sensory-guided decision making. bioRxiv. DOI: 10.1101/306019 PDF Presenter: Zack Schwartz |
| May 11 | C. Stringer, M. Pachitariu, N. Steinmetz, C.B. Reddy, M. Carandini, K.D. Harris. (2018) Spontaneous behaviors drive multidimensional, brain-wide population activity. bioRxiv. DOI: 10.1101/306019 PDF Presenter: Charlie Heller |
| May 18 | No meeting |
| May 25 | Allen Brain Observatory Tour http://observatory.brain-map.org/visualcoding Presenter: Alex Dimitrov |
| June 8 | O. Yuzgec, M. Prsa, R. Zimmermann, D. Huber. (2018) Pupil size coupling to cortical states protects the stability of deep sleep via parasympathetic modulation. Current Biology - February 5, 2018, doi: 10.1016/j.cub.2017.12.049 PDF Presenter: Daniela Saderi |
| June 15 | B. Herrmann and I.S. Johnsrude (2018). Neural signatures of the processing of temporal patterns in sounds. bioRxiv May 7, DOI: 10.1101/261271 PDF Presenter: Jesyin Lai |
| Date | Paper |
| January 12 | Y. I. Fishman, M. Kim, and M. Steinschneider (2017). A Crucial Test of the Population Separation Model of Auditory Stream Segregation in Macaque Primary Auditory Cortex. J Neuosci Nov 37:44 doi:10.1523/JNEUROSCI.0792-17.2017 - PDF Presenter: Luke Shaheen |
| January 26 | K.J. Miller, M.M. Botvinick, and C.D. Brody (2018). Value representations in orbitofrontal cortex drive learning, but not choice bioRxiv Jan 10, 2018 doi: https://doi.org/10.1101/245720 - PDF Presenter: Daniela Saderi |
| February 23 | A.M. Ni, D.A. Ruff, J.J. Alberts, J. Symmonds, M.R. Cohen (2018). Learning and attention reveal a general relationship between population activity and behavior Science Jan 26;359(6374):463-465. doi: 10.1126/science.aao0284 - PDF Presenter: Zack Schwartz |
| Fall 2017 | |
| Date | Paper |
| September 29 | A Uematsu, BZ Tan, EA Ycu, JS Cuevas, J Koivumaa, F Junyent,
EJ Kremer, IB Witten, K Deisseroth, JP Johansen (2017). Modular organization of the brainstem noradrenaline
system coordinates opposing learning states. Nature Neuroscience. Advanced online publication. doi:10.1038/nn.4642
- PDF Presenter: Daniela Saderi |
| October 6 | J. Feng and Wang (2017). Harmonic template neurons in primate auditory cortex
underlying complex sound processing. PNAS. doi:10.1073/pnas.1607519114
- PDF - Supplementary Information Presenter: Luke Shaheen |
| October 13 | J. Lai, E.L. Bartlett (2017). Age-related decline in behavioral discrimination of amplitude modulation frequencies compared to envelope-following responses. bioRxiv. Preprint doi: https://doi.org/10.1101/193268
- PDF Presenter: Jesyin Lai |
| October 20 | C.T. Anderson, M. Kumar, S. Xiong, T. Tzounopoulos (2017). Cell-specific gain modulation by synaptically released zinc in cortical circuits of audition. eLIFE. Sep 9;6. pii: e29893. doi: 10.7554/eLife.29893. - PDF Presenter: Douglas Zeppenfeld |
| October 27 | S. Tajima, K. Koida, C. I. Tajima, H. Suzuki, K. Aihara, H. Komatsu (2017). Task-dependent recurrent dynamics in visual cortex. eLIFE. Jul 24;6. pii: e26868. doi: 10.7554/eLife.26868. - PDF Presenter: Charlie Heller |
| November 3 | K. Tamura, M. Takeda, R. Setsuie, T. Tsubota, T. Hirabayashi, K. Miyamoto, Y. Miyashita (2017). Conversion of object identity to object-general semantic value in the primate temporal cortex. Science. Aug 18;357(6352):687-692. doi: 10.1126/science.aan4800. - PDF Presenter: Mateo Lopez-Espejo |
| November 10 | No Meeting (SfN) |
| November 17 | No Meeting |
| November 24 | No Meeting |
| December 1 | M. Lovett-Barron, A. S. Andalman, W. E. Allen, S. Vesuna, I. Kauvar, V. M. Burns, K. Deisseroth (2017). Ancestral circuits for the coordinated modulation of brain state. Cell 171:1-13. - PDF Presenter: Zack Schwartz |
| Summer 2017 | |
| Date | Paper |
| June 23 | A. Stigliani, B. Jeska, & K. Grill-Spector (2017). An encoding model of temporal processing in human visual cortex. bioRxiv. February 15. doi: http://dx.doi.org/10.1101/108985
- PDF Presenter: Jesyin Lai |
| June 30 | W. Guo, A.R. Clause, A. Barth-Maron, D.B. Polley (2017). A corticothalamic circuit for dynamic switching between feature detection and discrimination. Neuron. Jun 14. doi: 10.1016/j.neuron.2017.05.019
- PDF Presenter: Luke Shaheen |
| July 21 | S. Sabbah, J.A. Germmer, A. Bhatia-Lin, G. Manoff, G. Castro, J.K. Siegel, N. Jeffery & D.M. Berson (2017). A retinal code for motion along the gravitational and body axes. Nature. Jun 22;546(7659):492-497 - PDF Presenter: Douglas Zeppenfeld |
| August 11 | H.K. Kato, S.K. Asinof, J.S. Isaacson (2017). Network-level control of frequency tuning in Auditory Cortex. Neuron. Jul 19;95(2):412-423 - PDF Presenter: Mateo Lopez-Espejo |
| September 1 | Y. Xie, C. Nie, and T. Yang (2017). Covert Shift of Attention Modulates the Value Encoding in the Orbitofrontal Cortex. bioRxiv (Neuroscience). Aug 29;doi: http://dx.doi.org/10.1101/181784 - PDF Presenter: Daniela Saderi |
| September 15 | K.S. Henry, K.S. Abrams, J. Forst, M.J. Mender, E.G. Neilans, F. Idrobo, L.H. Carney (2017). Midbrain synchrony to envelope structure supports behavioral sensitivity to single-format vowel-like sounds in noise. JARO. Feb;18(1): 165-181 - PDF Presenter: Jesyin Lai |
| Archive: Spring 2017 | |
| Date | Paper |
|---|---|
| Mar 17 | J. Clemens, C.C. Giardin, P. Coen, X. Guan, B.J. Dickson, M. Murthy (2015).
Connecting neural codes with behavior in the auditory system of Drosophila. Neuron
87:1332-1343. - PDF -
Preview Presenter: Zack Schwartz |
| Mar 24 | D.E. Winkowski, D.A. Nagode, K.J. Donaldson, P. Yin,S.A. Shamma, J.B. Fritz, P.O. Kanold (2017). Orbitofrontal cortex neurons respond to sound and activate primary auditory cortex neurons. Cerebral Cortex - Jan 8. doi: 10.1093/cercor/bhw409. - PDF Presenter: Ulysses Duckler |
| Mar 31 | D.E. Wilson, G.B. Smith, A.L. Jacob, T. Walker, J. Dimidschstein, G. Fishell, D. Fitzpatrick (2017). GABAergic Neurons in Ferret Visual Cortex Participate in Functionally Specific Networks. Neuron - Mar 8;93(5):1058-1065. - PDF Presenter: All |
| Apr 7 | A. Giovannucci, A. Badura, B. Deverett, F. Najafi, T.D. Pereira, Z. Gao, I. Ozden, A.D. Kloth, E. Pnevmatikakis, L. Paninski, C.I De Zeeuw, J.F. Medina & S. S-H Wang (2017). Cerebellar granule cells acquire a widespread
predictive feedback signal during motor learning. Nature Neuroscience - Mar 20. doi: 10.1038/nn.4531. - PDF Presenter: Douglas Zeppenfeld |
| Apr 28 | K.C. Puvvada, J.Z. Simon (2017). Cortical representations of speech in a multi-talker auditory scene. BioRxiv - Apr. 26 doi: http://dx.org/10.1101/124750. - PDF Presenter: Daniela Saderi |
| May 19 | L.I. Schmitt, R.D. Wimmer, M. Nakajima, M. Happ, S. Mofakham, M.M. Halassa (2017). Thalamic amplification of cortical connectivity sustains attentional control. Nature. Online 03 May 2017. doi: 10.1038/nature22073. - PDF Presenter: Daniela Saderi |
| May 26 | D. Aronov, R. Nevers, D.W. Tank (2017). Mapping of a non-spatial dimension by the hippocampal-entorhinal circuit. Nature. Mar 29;543(7647):719-722. doi: 10.1038/nature21692. - PDF Presenter: Stephen David |
| June 9 | Singla S, Dempsey C, Warren R. Enikolopov & Sawtell NB (2017). A cerebellum-like circuit in the auditory system cancels responses to self-generated sounds. Nature Neuroscience. May 22. doi: 10.1038/nn.4567. - PDF Presenter: Douglas Zeppenfeld |
| June 16 | Y. Han, J.M. Kebschull, R.A.A. Campbell, D. Cowan, F. Imhof, A.M. Zador, T.D. Mrsic-Flogel (2017). A single-cell anatomical blueprint for intracortical information transfer from primary visual cortex. bioRxiv. June 9.
http://dx.doi.org/10.1101/148031
- PDF Presenter: Daniela Saderi |
| Archive: Winter 2016 | |
| Date | Paper |
| January 13 | B. L. Robinson, N. S. Harper & D. McAlpine (2016). Meta-adaptation in the auditory midbrain under cortical influence Nature Communications Nov 24;7:13442 - PDF Presenter: Daniela Saderi |
| January 20 | S. Kato, H.S. Kaplan,T. Schrödel, S. Skora, T.H. Lindsay, E. Yemini,S. Lockery, and M. Zimmer (2015). Global brain dynamics embed the motor command sequence of Caenorhabditis elegans. Cell Oct 22;163(3):656-69 - PDF Presenter: All |
| January 27 | TBA Presenter: Erick Gallun |
| Feb 13 | ARO - No meeting |
| Feb 24 | V.C. Caruso, J.T. Mohl, C. Glynn, J. Lee, S. Willett, A. Zaman, R. Estrada, S. Tokdar, J.M. Groh (2017). Evidence for time division multiplexing of multiple simultaneous items in a sensory coding bottleneck bioRxiv Feb. 9, 2017 doi: http://dx.doi.org/10.1101/107185 - PDF Presenter: Jean Lienard |
| Feb 27 | **NGP Recruitment** 2:15PM Vollum 4M. K.V. Kuchibhotla, J.V. Gill, G.W. Lindsay, E.S. Papadoyannis, R.E. Field, T.A. Hindmarsh Sten, K.D. Miller & R.C. Froemke (2017). Parallel processing by cortical inhibition enables context-dependent behavior. Nature Neuroscience - Jan;20(1):62-71 - PDF Presenter: Daniela Saderi |
| Mar 3 | C. Stringer, M. Pachitariu, N.A. Steinmetz, M. Okun, P. Bartho, K.D. Harris, M. Sahani, N.A. Lesica (2016). Inhibitory control of correlated intrinsic variability in cortical networks. eLife - Dec 7;5. pii: e19695. - PDF Presenter: Charlie Heller |
| Archive: Fall 2016 | |
| Date | Paper |
| September 9 | N. C. Rabinowitz, R. L. Gorris, M. Cohen, E. P. Simoncelli (2015). Attention stabilizes the shared gain of V4 populations eLIFE 4:e08998. - PDF Presenter: Stephen David |
| September 30 | M. F. Glasser, T. S. Coalson, E. C. Robinson, C. D. Hacker, J. Harwell, E. Yacoub,
K. Ugurbil, J. Andersson, C. F. Beckmann, M. Jenkinson, S. M. Smith, D. C. Van Essen (2016). A multi-modal parcellation of human cerebral cortex. Nature 536: 171–178 - PDF Presenter: Zack Schwartz |
| October 21 | J. S. Wu, E. D. Young, E. Glowatzki (2016). Maturation of spontaneous firing properties after hearing ontset in rat auditory nerve fibers: spontaneous rates, refractoriness, and interfiber correlations. The Journal of Neuroscience 36(41):10584-10597 - PDF Presenter: Sean Slee |
| October 28 | R.D. Wimmer, L.I. Schmitt, T.J. Davidson, M. Nakajima, K. Deisseroth, M.M. Halassa (2015). Thalamic control of sensory selection in divided attention. Nature 526(7575):705-9 - PDF Presenter: Daniela Saderi |
| December 2 | P. Lakatos, A. Barczak, S.A. Neymotin, T. McGinnis, D. Ross, D.C. Javitt, M.N. O'Connell (2016). Global dynamics of selective attention and its lapses in primary auditory cortex. Nature Neuroscience 19:1707-1717 - PDF Presenter: Luke Shaheen |
| December 9 | T.A. Engel, N.A. Steinmetz, M.A. Gieselmann, A. Thiele, T. Moor, K. Boahen (2016). Selective modulation of cortical state during spatial attention. Science Vol. 354, Issue 6316, pp. 1140-1144 - PDF - Supplementary Material Presenter: All |
| Archive: Spring 2016 | |
| Date | Paper |
| April 1 | J. K. Baruni, B. Lau, & C. D. Salzman (2015). Reward expectation differentially modulates attentional behavior and activity in visual area V4. Nat. Neuroscience Nov;18(11):1656-63 - PDF Background: J.H.R. Maunsell (2004). Neuronal representations of cognitive state: reward or attention? Trends Cog. Sci. June 8(6):261-5 - PDF Presenter: Zack Schwartz |
| April 8 | Y. Chen, S. Martinez-Conde, S. L. Macknik, Y. Bereshopolova, H. A. Swadlow, J. M. Alonso (2008). Task difficulty modulates the activity of specific neuronal populations in primary visual cortex. Nat. Neuroscience Aug;11(8):974-82 - PDF Presenter: Daniela Saderi |
| April 15 | S. Ohmae & J. F. Medina (2015). Climbing fibers encode a temporal-difference prediction error during cerebellar learning in mice. Nat. Neuroscience Dec;18(12):1798-803 - PDF Presenter: Luci Moore |
| April 22 | G. A. Matthews et al., (2016). Dorsal raphe dopamine neurons represent the experience of social isolation. Cell Feb 11;164(4):617-31 - PDF Presenter: Jeffrey Tang |
| April 29 | D. Vallentin, G. Kosche, D. Lipkind, M. A. Long (2016). Inhibition protects acquired song segments during vocal learning in zebra finches. Science Jan 15;351(6270):267-71 - PDF
- Supplementary Materials Presenter: Sami Friedrich |
| May 13 | A.G. Huth, W.A. de Heer, F.E. Theunissen, J.L. Gallant (2016). Natural speech reveals the semantic maps that tile human cerebral cortex. Nature Apr 28;532(7600):453-8 - PDF
- Supplementary Information Presenter: Daniela Saderi |
| May 27 | H. Hong, D.L. Yamins, N.J. Majaj, J.J. DiCarlo (2016). Explicit information for category-orthogonal object properties increases along the ventral stream. Nature Neuroscience Apr;19(4):613-22 - PDF
- Supplementary Information Presenter: Alex Dimitrov |
| June 3 | **BEHN-NGP Seminar Series** - Leah Krubitzer, PhD - "Cortical plasticity within and across lifetime" - 4PM Vollum M1441 Flyer |
| June 10 | D.E. Mitchell, C.C. Della Santina, K.E. Cullen (2016). Plasticity within non-cerebellar pathways rapidly shapes motor performance in vivo. Nature Communications May 9;7:11238 - PDF Presenter: Tim Balmer |
| June 17 | J.P. Mayo and J.H.R Maunsell (2016). Graded neuronal modulations related to visual spatial attention. The Journal of Neuroscience May 11;36(19):5353-61 - PDF Presenter: Daniela Saderi |
| Archive: Winter 2016 | |
| Date | Paper |
| January 8 | J.D. Yao, P. Bremen, J.C. Middlebrooks (2015). Emergence of spatial stream segregation in the auditory pathway. J. Neurosci. Dec 9;35(49):16199-212 - PDF Presenter: Daniela Saderi |
| January 15 | J. Tsunada, A.S.K. Liu, J.I. Gold, Y.E. Cohen (2016). Causal contribution of primate auditory cortex to auditory perceptual decision-making. Nature Neuroscience Jan;19(1):135-142 - PDF Presenter: Zack Schwartz |
| January 22 | G. Fuhrmann, I. Segev, H. Markram, and M. Tsodyks (2002). Coding of temporal information by activity-dependent synapses J. Neurophysiol. Jan;87(1):140-8. - PDF Presenter: Luci Moore |
| January 29 | N. Ding, L. Melloni, H. Zhang, X. Tian, D. Poeppel (2016). Cortical tracking of hierachical linguistic structures in connected speech Nat. Neurosci. Jan;19(1):158-64. - PDF
- Supplementary Information Presenter: Sean Slee |
| February 5 | N. Barascud, M. T. Pearce, T. D. Griffiths, K. J. Friston, and M. Chait (2016) . Brain responses in humans reveal ideal observer-like sensitivity to complex acoustic patterns PNAS Jan 19. pii: 201508523. - PDF Presenter: Daniela Saderi |
| February 12 | A. R. Chambers, J. Resnik, Y. Yuan, J. P. Whitton, A. S. Edge, M. C. Liberman, D. B. Polley (2016). Central gain restores auditory processing following near-complete cochlear denervation. Neuron Jan 28. pii: S0896-6273(15)01169-1. doi: 10.1016/j.neuron.2015.12.041. [Epub ahead of print] - PDF Presenter: Brad Buran |
| February 19 | No Meeting (ARO) |
| March 11 | **BEHN-NGP Seminar Series** - Pat Levitt, PhD - PDF |
| March 18 | I. M. Park, M. L. R. Meister, A. C. Huk & J. W. Pillow (2014). Encoding and decoding in parietal cortex during sensorimotor decision-making. Nature Neuroscience Oct;17(10):1395-403 - PDF Presenter: All (Stephen David) |
| Archive: Fall 2015 | |
| Date | Paper |
| September 25 | B. Hangya, S.P. Renade, M. Lorenc, A. Kepecs (2015). Central cholinergic neurons are rapidly recruited by reinforcement feedback. Cell Aug 27;162(5):1155-68. - PDF Presenter: Zack Schwartz |
| October 2 | R.S. Williamson, K.E. Hancock, B.G. Shinn-Cunningham, D.B. Polley (2015). Locomotion and Task Demands Differentially Modulate Thalamic Audiovisual Processing during Active Search. Curr. Biol. Jul 20;25(14):1885-91 - PDF Presenter: Daniela Saderi |
| October 9 | P.T. Sadtler, K.M. Quick, M.D. Golub, S.M. Chase, S.I. Ryu, E.C. Tyler-Kabara, B.M. Yu, A.P. Batista (2014). Neural constraints on learning. Nature Aug 28;512(7515):423-6 - PDF Presenter: Stephen David |
| October 16 | No Meeting (SfN) |
| October 23 | J.D. Downer, M. Niwa, M.L. Sutter (2015). Task engagement selectively modulates neural correlations in primary auditory cortex. J. Neurosci. May 13;35(19):7565-74 - PDF
- JC Article Presenter: Sean Slee |
| October 30 | No Meeting |
| November 6 | R. Coen-Cagli, A. Kohn & O. Schwartz (2015). Flexible gating of contextual influence in natural vision. Nature Neuroscience Nov;18(11):1648-55. - PDF Presenter: Daniela Saderi |
| November 13 | R. L. T. Goris, J. A. Movshon, E. P Simoncelli (2014). Partitioning neuronal variability. Nature Neuroscience June;17(6):858-65. - PDF
- News & views Presenter: Zack Schwartz |
| November 20 | C.H. Keller, T.T. Takahashi (2015). Spike timing precision changes with spike rate adaptation in the owl's auditory space map. J. Neurophysiol. Oct;114(4):2204-19. - PDF Presenter: Alex Dimitrov |
| November 27 | No Meeting (Thanksgiving) |
| December 4 | H.K. Kato, S.N. Gillet, J.S. Isaacson (2015). Flexible sensory representations in auditory cortex driven by behavioral relevance Neuron Nov 11. pii: S0896-6273(15)00918-6. doi: 10.1016/j.neuron.2015.10.024. [Epub ahead of print] - PDF Presenter: Tim Balmer |
| December 11 | K. Reinhold, A.D. Lien, M. Scanziani (2015). Dinstict recurrent versus afferent dynamics in cortical visual processing. Nat. Neurosci. Dec;18(12):1789-97. doi: 10.1038/nn.4153. [Epub ahead of print] - PDF - News & Views Presenter: Sami Friedrich |
| December 18 | N. Chen, H. Sugihara, & M. Sur (2015). An acetylcholine-activated microcircuit drives temporal dynamics of cortical activity. Nat. Neurosci. Jun;18(6):892-902. - PDF Presenter: Jefferey Tang |
| Archive: Summer 2015 | |
| Date | Paper |
| June 23 | M.J. McGinley, S.V. David, D.A. McCormick (2015). Cortical membrane potential signature of optimal states for sensory signal detection. Neuron In Press - PDF Presenter: All |
| June 30 | G.H. Otazu, H. Chae, M.B. Davis, and D.F. Albeanu (2015). Cortical feedback decorrelates olfactory bulb output in awake mice. Neuron Jun 17;86(6):1461-77. - PDF Presenter: All |
| July 7 | L.F. Abbott, J.A. Varela, K. Sen, S.B. Nelson (1997). Synaptic depression and cortical gain control. Science Jan 10;275(5297):220-4. - PDF Presenter: All |
| July 14 | K.P Walsh, E.G. Pasanen, D. McFadden (2015). Changes in otoacoustic emissions during selective auditory and visual attention. J. Acoust Soc Am May;137(5):2737. - PDF Presenter: All |
| July 21 | No Meeting |
| July 28 | No Meeting |
| Aug 4 | J.S. Rothman, L. Cathala, V. Steuber & R.A. Silver (2009). Synaptic depression enables neuronal gain control. Science Feb 19;457(7232):1015-8. - PDF Presenter: All |
| Aug 11 | A. Friedman, D. Homma, L.G. Gibb, K. Amemori, S.J. Rubin, A.S. Hood, M.H. Riad, A.M. Graybiel (2015). A corticostriatal path targeting striosomes controls decision-making under conflict. Cell Jun 4;161(6):1320-33. - PDF Preview: N. Kolling, M.F.S. Rushworth (2015). What's worth the risk? A neural circuit for trade-offs. Cell Jun 4;161(6):1243-4. - PDF Presenter: All |
| Aug 18 | No Meeting |
| Aug 25 | D.Y. Takahashi, A.R. Fenley, Y. Teramoto, D.Z. Narayanan, J.I. Borjon, P. Holmes, A.A. Ghazanfar (2015). The developmental dynamics of marmoset monkey vocal production. Science Aug 14; 349(6249):734-8. - PDF Presenter: All |
| Archive: Spring 2015 | |
| Date | Paper |
| April 10 | N. Ulanovsky, L. Las and I. Nelken (2003). Processing of low-probability sounds by cortical neurons. Nature Neuroscience Apr;6(4):391-8 - PDF Presenter: Daniela Saderi |
| April 17 | 3:30 PM - Vollum M1441- OHRC Seminar: "Neural pathways for auditory cognition in rodents". PDF Presenter: Santiago Jaramillo |
| April 24 | M. Okun, N.A. Steinmetz, L. Cossell, M.F. Iacaruso, H. Ko, P. Bartho, T. Moore, S.B. Hofer, T.D. Mrsic-Flogel, M. Carandini & K.D. Harris (2015). Diverse coupling of neurons to populations in
sensory cortex. Nature Apr. 6 doi:10.1038/nature14273- PDF Background: M.L. Scholvinck, A.B. Saleem, A. Benucci, K.D. Harris, M. Carandini (2015). Cortical state determines global variability and correlations in visual cortex. The Journal of Neuroscience Jan 7;35(1):170-8 - PDF Presenter: Alex Dimitrov |
| May 1 | R. Xie, J.X. Gittelman, G.D. Pollak (2007). Rethinking tuning: in vivo whole-cell recordings in the inferior colliculus in awake bats. The Journal of Neuroscience Aug 29;27(35):9469-81 - PDF Presenter: Luci Moore |
| May 8 | V. de Lafuente, R. Romo (2005). Neuronal correlates of subjective sensory experience. Nature Neuroscience Dec;8(12):1698-703 - PDF Presenter: Nora Hammack |
| May 15 | H. Asari & M. Meister (2012). Divergence of visual channels in the inner retina. Nature Neuroscience Nov;15(11):1581-9 - PDF Presenter: Ben Murphy-Baum |
| May 22 | R. Kiani and M.N. Shadlen (2009). Representation of Confidence Associated with a Decision by Neurons in the Parietal Cortex. Science May 8;324(5928):759-64 - PDF Presenter: Daniela Saderi |
| May 29 | No Meeting |
| June 5 | Q. Xiong, P. Znamenskiy, A.M. Zador (2015). Selective corticostriatal plasticity during acquisition of an auditory discrimination task. Nature May 21;521, 348-351 - PDF Presenter: Hsin-Wei |
| June 12 | T.Z. Luo and J.H.R. Maunsell (2015). Neuronal modulations in visual cortex are associated with only one of multiple components of attention. Neuron Jun 3;86(5):1182-8 - PDF Presenter: Daniela Saderi |
| Archive: Winter 2015 | |
| Date | Paper |
| January 9 | M. Elihali, L. Ma, C. Micheyl, A.J. Oxenham, and S.A. Shamma (2009). Temporal coherence in the perceptual organization and cortical representation of auditory scenes. Neuron 61, 317-329. - PDF Presenter: Zack Schwartz |
| January 23 | M. Xue, B.V. Atallah, M. Scanziani (2014). Equalizing excitation-inhibition ratios across visual cortical neurons. Nature 511:596-600. - PDF Presenter: Daniela Saderi |
| February 6 | K.I. Nagel, E.J. Hong, R.I. Wilson (2014). Synaptic and circuit mechanisms promoting broadband transmission of olfactory stimulus dynamics. Nature Neuroscience 18(1):56-65. - PDF Presenter: Hsin-Wei |
| March 13 | Numenta (2011). Hierarchical Temporal Memory (including HTM Cortical Learning Algorithms. PDF Presenter: Sandy Dash |
| March 27 | P.H. Delano, D. Elgueda, C.M. Hamame, L. Robles (2007). Selective attention to visual stimuli reduces cochlear sensitivity in Chinchillas. Journal of Neuroscience 27(15):4146-53. PDF Presenter: Brad Buran |
| Archive: Fall 2014 | |
| Date | Paper |
| October 3 | D.M. Schneider, A. Nelson, R. Mooney. (2014) A synaptic and circuit basis for corollary discharge in the auditory cortex. Nature. 513(7517):189-94. - PDF Presenter: Daniela Saderi |
| October 10 | R.L. Redondo, J. Kim, A.L. Arons, S. Ramirez, X. Liu,
S. Tonegawa. (2014) Bidirectional switch of the valence associated
with a hippocampal contextual memory engram. Nature. 513: 426-430. - PDF Background: S. Ramirez, S. Tonegawa and X. Liu. (2014) Identification and optogenetic manipulation of memory engrams in the hippocampus. Front. Behav. Neurosci.. 17;7:226. - PDF Presenter: Zack Schwartz |
| October 17 | C.C. Rodgers, M.R. DeWeese (2014) Neural correlates of task switching in prefrontal cortex and primary auditory cortex in a novel stimulus selection task for rodents. Neuron 82: 1157-70. - PDF - News & views Presenter: Sean Slee |
| October 24 | C. DiMattina, K. Zhang (2013) Adaptive stimulus optimization for sensory systems neuroscience. Front Neural Circuits 7:101. - PDF Presenter: Alex Dimitrov |
| November 7 | J. Reimer, E Froudarakis, C.R. Cadwell, D. Yatsenko, G.H. Denfield, and A.S. Tolias (2014) Pupil fluctuations track fast switching of cortical states during quiet wakefulness. Neuron 84, 355-362. - PDF - News & views Presenter: All |
| December 5 | M. Pecka, Y. Han, E. Sader, and T. D. Mrsic-Flogel (2014) Experience-dependent specialization of receptive-field surround for selective coding of natural scenes. Neuron 84, 457-469. - PDF Presenter: All |
| December 19 | M.N. O'Connell, A. Barczak, C.E. Schroeder, P. Lakatos (2014) Layer specific sharpening of frequency tuning by selective attention in primary auditory cortex. Journal of Neuroscience. 34(49):16496-508. PDF Presenter: Daniela Saderi |
| Archive: Summer 2014 | |
| Date | Paper |
| July 18 | J.L. Herrero, M.J. Roberts, L.S. Delicato, M.A. Gieselmann, P. Dayan, A. Thiele (2008) Acetylcholine contributes through muscarinic receptors to attentional modulation in V1. Nature. 454: 1110-4. - PDF Background: K.D. Harris & A. Thiele (2011) Cortical state and attention. Nature Reviews Neuroscience. 12: 509-23. - PDF Presenter: Zack Schwartz |
| July 25 | P. Znamenskiy, A.M. Zador. (2013) Corticostriatal neurons in auditory cortex drive decisions during auditory discrimination. Nature. 497: 482-5. PDF Presenter: Daniela Saderi |
| August 1 | V. Mante, D. Sussillo, K.V. Shenoy & W.T. Newsome (2013) Context-dependent computation by recurrent dynamics in prefrontal cortex. Nature. 7;503(7474):78-84. - PDF Presenter: Hillary Rodgers |
| August 8 | No meeting |
| August 15 | A.R. Chambers, K.E. Hancock, K. Sen, D.B. Polley (2014) Online stimulus optimization rapidly reveals multidimensional selectivity in auditory cortical neurons. J. Neurosci.. 34(27):8963-75 - PDF Presenter: Jean Lienard |
| Archive: Spring 2014 | |
| Date | Paper |
| April 4 | A. Kennedy, G. Wayne, P. Kaifosh, K. Alvina, L.F.Abbott, N.B. Sawtell. (2014) A temporal basis for predicting the sensory consequences of motor commands in an electric fish. Nature Neuroscience. 17: 416-422. - PDF Presenter: Carol Glogowski |
| April 11 | Alexander Borst & Frederic E. Theunissen. (1999) Information theory and neural coding. Nature Neuroscience. 2: 947-57. - PDF Presenter: Alex Dimitrov |
| April 18 | No meeting |
| April 25 | G. Chechik, M.J. Anderson, O. Bar-Yosef, E.D. Young, N. Tishby, I. Nelken. (2006) Reduction of information redundancy in the ascending auditory pathway.
Neuron. 51(3):359-68.
- PDF
- News & views
Presenter: Zack Schwartz |
| May 2 | P. Coen, J. Clemens, A.J. Weinstein, D.A. Pacheco, Y. Deng, M. Murthy (2014)
Dynamic sensory cues shape song structure in Drosophila. Nature. 507(7491):233-7.
- PDF Presenter: Hsin-Wei Lu |
| May 9 | S. Liu, Y. Gu, G.C. DeAngelis, D.E. Angelaki. (2013)
Choice-related activity and correlated noise in subcortical vestibular neurons
Nature Neuroscience. 16(1):89-97.
- PDF
Presenter: Daniela Saderi |
| May 16 | A. Gdalyahu, E. Tring, P. Polack, R. Gruver, P. Golshani, M.S. Fanselow,
A.J. Silva, J.T. Trachtenberg. (2012) Associative Fear Learning Enhances Sparse Network Coding in Primary Sensory Cortex. 75(1):121-132.
- PDF Presenter: Reena Clements |
| May 23 | R.M. Haefner, S. Gerwinn, J.H. Macke, M. Bethge. (2013) Inferring decoding strategies from choice probabilities in the presence of correlated variability. Nature Neuroscience. 16(2):235-42.
- PDF Presenter: Everyone |
| May 30 | S.J. Tripathy, K. Padmanabhan, R.C. Gerkin, N.N. Urban. (2013) Intermediate intrinsic diversity enhances neural population coding. Proceedings of the National Academy of Sciences USA. 110(20):8248-53. - PDF Presenter: Hillary Rodgers |
| Archive: Winter 2014 | |
| Date | Paper |
| January 10 | S.D. Wiederman & D.C. O'Carroll. (2013) Selective attention in an insect visual neuron. Current Biology 23: 156-61. - PDF Presenter: Dan Yaeger |
| January 17 | L.S. Hamilton, J. Sohl-Dickstein, A.G. Huth, V.M. Carels, K. Deisseroth, S. Bao. (2013) Optogenetic Activation of an Inhibitory Network Enhances Feedforward Functional Connectivity in Auditory Cortex. Neuron 80: 1066-76. - PDF Presenter: Daniela Saderi |
| January 24 | L.O. Sun et al. (2013) On and Off Retinal Circuit Assembly by Divergent Molecular Mechanisms. Science. 342 (6158) - PDF Presenter: Reena Clements |
| January 31 | T.M. Centanni, A.M. Sloan, A.C. Reed, C.T. Engineer, R.L. Rennacker II, M.P. Kilgard (2014) Detection and identification of speech sounds using cortical activity patterns. Neuroscience. 258: 292-306. - PDF Presenter: Jean Lienard |
| February 7 | No meeting (snow day) |
| February 14 | N. Mesgarani, E.F. Chang (2012) Selective cortical representation of attended speaker in multi-talker speech perception. Nature. 485: 233-236. - PDF Presenter: Zack Schwartz |
| February 21 | No meeting (ARO) |
| February 28 | Z.V. Guo et al. (2014) Flow of cortical activity underlying a tactile decision in mice. Neuron. 81(1):179-94. - PDF Presenter: Hsin-Wei Lu |
| March 7 | A. Zenon and R.J. Krauzlis. (2012) Attention deficits without cortical neuronal deficits. Nature. 489(7416) 434-7. - PDF Presenter: Dan Yaeger |
| March 14 | L.Y. Li, X.R. Xiong, L.A. Ibrahim, W. Yuan, H.W. Tao, L.I. Zhang. (2014) Differential Receptive Field Properties of Parvalbumin and Somatostatin Inhibitory Neurons in Mouse Auditory Cortex. Cerbral Cortex. E-Pub pre-print.
- PDF Presenter: Reena Clements |
| March 21 | C.I. Petkov, K.N. O'Connor, M.L. Sutter. (2007) Encoding of Illusory Continuity in Primary Auditory Cortex. Neuron. 54(1) 153-65. - PDF Presenter: Daniela Saderi |
| March 28 | No meeting (Spring Break) |
| Archive: Fall 2013 | |
| Date | Paper |
| October 4 | M.M. Churchland et al. (2010) Stimulus onset quenches neural variability: a widespread cortical phenomenon. Nature Neuroscience. 13(3):369-78. - PDF Presenter: Stephen David |
| October 11 | H. Ko, L. Cossell, C. Baragli, J. Antolik, C. Clopath, S. B. Hofer, T. D. Mrsic-Flogel. (2013) The emergence of functional microcircuits in visual cortex. Nature. 496: 96-100. - PDF Presenter: Carol Glogowski |
| October 18 | S.P. Mysore, E.I. Knudsen. (2013) A shared inhibitory circuit for both exogenous and endogenous control of stimulus selection. Nature Neuroscience. 16(4): 473-478. - PDF Background: S.P. Mysore, E.I. Knudsen. (2011) The role of a midbrain network in competitive stimulus selection. Curr Opin Neurobiol 21(4): 653-60. - PDF Presenter: Sean Slee |
| October 25 | D. Bendor, X. Wang. (2005) The neuronal representation of pitch in primate auditory cortex.
Nature. 436:1161-5. - PDF Presenter: Hsin-wei Lu |
| November 1 | S.Y. Takemura et al. (2013) A visual motion detection circuit suggested by Drosophila connectomics.
Nature. 500: 175-181. - PDF Presenter: Zack Schwartz |
| November 8 | No meeting (Society for Neuroscience) |
| November 15 | S.E.J. de Vries et al. (2011) The Projective Field of a Retinal Amacrine Cell.
Journal of Neuroscience 31(23):8595-8604. - PDF Presenter: Ben Murphy-Baum |
| November 22 | C.M. Constantinople, R.M. Bruno. (2013) Deep Cortical Layers Are Activated Directly by Thalamus.
Science. 340 1591-4. - PDF Presenter: Reena Clements |
| November 29 | No meeting (Thanksgiving) |
| December 6 | R. Schmidt et al. (2013) Canceling actions involves a race between basal ganglia pathways.
Nature Neuroscience. 16(8):1118-24 - PDF Presenter: Danielle Robinson |
| December 13 | HJ Pi et al. (2013) Cortical interneurons that specialize in disinhibitory control.
Nature. 503(7477):521-4 - PDF Presenter: Daniela Saderi |
Further reading (and some ideas for future papers): | ||||
| Interpretation of LFP signals in cortex M.W. Reimann, C.A. Anastassiou, R. Perin, S.L. Hill, H. Markram, C. Koch (2013) A Biophysically Detailed Model of Neocortical Local Field Potentials Predicts the Critical Role of Active Membrane Currents. Neuron 79: 375-390. - PDF | ||||
| Gain control and STRFs N.C. Rabinowitz, B.D. Willmore, J.W. Schnupp, A.J. King. (2012) Spectrotemporal contrast kernels for neurons in primary auditory cortex. Journal of Neuroscience. 32(33):11271-84. - PDF | ||||
| Ferret Auditory Cortex J.K. Bizley, F.R. Nodal, I. Nelken, A.J. King. (2005) Functional Organization of Ferret Auditory Cortex. Cerebral Cortex. 15: 1637-1653. - PDF | ||||
| I. Nelken, J.K. Bizley, F.R. Nodal, B.Ahmed, J.W.H. Schnupp, A.J. King. (2004) Large-Scale Organization of Ferret Auditory Cortex Revealed Using Continuous Acquisition of Intrinsic Optical Signals. Journal of Neurophysiology. 92:2574-2588. - PDF | ||||
| Attention Reviews J.H. Reynolds, L. Chelazzi. (2004) Attentional modulation of visual processing. Annual Review of Neuroscience. 27: 611.47. - PDF | ||||
| J.B. Fritz, M. Elhilali, S.V. David, S.A. Shamma. (2007) Does attention play a role in dynamic receptive field adaptation to changing acoustic salience in A1? Hearing Research 229: 186.203. - PDF | ||||
| M.C.-K. Wu, S.V. David, J.L. Gallant. (2006) Complete Functional Characterization of Sensory Neurons by System Identification. Annual Review of Neuroscience. 29:477.505. - PDF | ||||
| J.A. Mazer, W.E. Vinje, J. McDermott, P.H. Schiller, J.L. Gallant. (2002) Spatial frequency and orientation tuning dynamics in area V1. Proceedings of the National Academy of Sciences USA. 99(3): 1645-50. (Parametric reverse correlation) - PDF | ||||
| S. Bandyopadhyay, L.A.J. Reiss, E.D. Young. (2007) Receptive Field for Dorsal Cochlear Nucleus Neurons at Multiple Sound Levels. Journal of Neurophysiolgy. 98: 3505.15. - PDF | ||||
| P.C. Nelson, Z.M. Smith, E.D. Young. (2009) Wide-Dynamic-Range Forward Suppression in Marmoset Inferior Colliculus Neurons Is Generated Centrally and Accounts for Perceptual Masking. The Journal of Neuroscience. 29(8): 2553.62. - PDF | ||||
| Theunissen FE, Sen K, Doupe AJ. (2000) Spectral-temporal receptive fields of nonlinear auditory neurons obtained using natural sounds. Journal of Neuroscience. 20(6):2315-31. - PDF | ||||
| D.M. Schneider, S.M. Woolley. (2011) Extra-classical tuning predicts stimulus-dependent receptive fields in auditory neurons. Journal of Neuroscience. 31(33):11867-78. - PDF | ||||
| N.C. Rabinowitz, B.D. Willmore, J.W. Schnupp, A.J. King. (2012) Spectrotemporal contrast kernels for neurons in primary auditory cortex. Journal of Neuroscience. 32(33):11271-84. - PDF | ||||
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